PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000700G0690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 386aa    MW: 41996.9 Da    PI: 9.0706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000700G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.64.5e-29191462103
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.................... CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.................... 74 
                      Fl+k y++++d+++++++sw  ++ +sfvv+ + efa++vLp+yFkh+nf+SFvRQLn+Y     + + +                        
  PH01000700G0690  19 FLTKAYQLVDDPATDHVVSWGdDRASSFVVWRPPEFARDVLPSYFKHNNFSSFVRQLNTYVRICARAPLHL--Pvvyvgvcdlvcaerlqcniv 110
                      9********************7778***********************************87777777665..245999****99999999888 PP

                      .....X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 .....k..ekiweFkhksFkkgkkellekikrkkse 103
                           k  ++ weF+++ F+kg+k+ll++i+r+ks+
  PH01000700G0690 111 mqgfrKvvPERWEFANEFFRKGEKQLLHEIHRRKSA 146
                      776651669************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-321078IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-3915143IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.89E-2616143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-131942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2619143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-135870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-137183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.7E-32113137IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEWESDVAAG QKASVPAPFL TKAYQLVDDP ATDHVVSWGD DRASSFVVWR PPEFARDVLP  60
SYFKHNNFSS FVRQLNTYVR ICARAPLHLP VVYVGVCDLV CAERLQCNIV MQGFRKVVPE  120
RWEFANEFFR KGEKQLLHEI HRRKSAAAAG PPFLPPFFGL FRPDDGMVLH GLGALAPQRH  180
WLEAAGGPVA TSRLLALGPT TTTAEALMEE NERLRRGNAA LLQELAHMRK LYSDIIYFVQ  240
NHVRPVAPSP AAAAVLHGLG MSSKQALAAE ARNASGRSAT SSSSLTVAED QPSLALLPRT  300
EKIGTEAAGT SSSSRTRAGR PGPTKLFGVD LSTDQTCGAS RKRSLQEQPP TSPDWKRSMV  360
LACDDLRLSV VPPPQPCAVS SPARI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-161314324129Heat shock factor protein 1
5d5v_B1e-161314324129Heat shock factor protein 1
5d5u_B1e-161314324129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046933e-62AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149643e-62AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.11e-111PREDICTED: putative heat stress transcription factor B-4a
SwissprotQ6Z9R81e-113HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0E0LVT21e-125A0A0E0LVT2_ORYPU; Uncharacterized protein
STRINGORGLA08G0155600.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-69heat shock transcription factor B4